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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
107
single cell RNA-seq
50
ATAC-seq
49
snATAC-seq
41
WGBS
17
pCHi-C
7
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
118
Transcription
99
DNA accessibility
41
DNA methylation
3
3D chromatin structure
Date released
134
May, 2022
47
September, 2023
23
February, 2023
19
April, 2020
18
September, 2020
17
May, 2021
16
January, 2021
4
March, 2023
3
October, 2022
2
March, 2020
Available data
196
bigWig
bam
fastq
153
zippedFastqFolder
104
tsv
88
bed narrowPeak
84
tagAlign
3
bedpe bed3+
3
cool
3
hic
Organism
278
Homo sapiens
Biosample type
179
primary cell
95
tissue
7
cell line
2
stem cell
Organ
111
pancreas
83
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
155
HPAP
58
T1D
47
KPMP
19
LungMap
4
community
ITG
Genome assembly (visualization)
3
hg19
Lab
155
Klaus Kaestner, Upenn
56
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
2
AMP-T2D consortium
Audit category:
3
audit script error
1
inconsistent ontology term
award.project!
AMP
ITG
files.file_type!
bam
fastq
organ_slims!
vein
BIOSAMPLE
ASSAY
283 results
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Clear Filters
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
total RNA-seq
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
51
21
pancreatic alpha cell
22
25
1
pancreatic beta cell
13
16
1
peripheral blood mononuclear cell
8
pancreatic acinar cell
4
1
+ See 15 more…
tissue
kidney
47
islet of Langerhans
11
6
7
lung
9
10
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
See all biosamples
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