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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
120
single cell RNA-seq
88
ChIP-seq
60
ATAC-seq
41
WGBS
39
snATAC-seq
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
321
Transcription
99
DNA accessibility
88
DNA binding
41
DNA methylation
4
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
153
May, 2021
134
May, 2022
99
February, 2023
59
September, 2020
47
September, 2023
February, 2021
45
May, 2020
16
January, 2021
7
August, 2020
7
March, 2020
5
March, 2023
3
October, 2022
Available data
196
bigWig
186
bam
153
zippedFastqFolder
124
fastq
98
tsv
88
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
571
Homo sapiens
Biosample type
484
primary cell
78
tissue
11
cell line
2
stem cell
Organ
180
pancreas
150
epithelium
47
kidney
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
279
HPAP
244
T1D
47
KPMP
LungMap
4
community
1
ITG
Genome assembly (visualization)
197
GRCh38
189
hg19
Lab
279
Klaus Kaestner, Upenn
236
Kyle Gaulton, UCSD
47
KPMP
8
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
9
inconsistent ontology term
3
audit script error
award.project!
AMP
LungMap
month_released!
February, 2021
BIOSAMPLE
ASSAY
575 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
ATAC-seq
WGBS
snATAC-seq
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
pancreatic alpha cell
42
29
25
1
Langerhans cell
73
21
pancreatic beta cell
11
16
16
1
exocrine cell
39
+ See 37 more…
tissue
kidney
47
islet of Langerhans
7
2
11
6
pancreas
4
thymus
1
cell line
EndoC_BH1
2
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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