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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
single cell RNA-seq
92
total RNA-seq
37
snATAC-seq
10
ATAC-seq
6
WGBS
3
Hi-C
Assay category
200
Transcription
47
DNA accessibility
6
DNA methylation
3
3D chromatin structure
Date released
May, 2022
76
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
19
April, 2020
7
August, 2020
March, 2023
3
October, 2022
Available data
169
fastq
19
zippedFastqFolder
10
bigWig
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
255
Homo sapiens
Biosample type
190
primary cell
66
tissue
Organ
72
epithelium
72
pancreas
47
kidney
19
lung
Project
AMP
T1D
190
HPAP
47
KPMP
19
LungMap
Genome assembly (visualization)
10
GRCh38
3
hg19
Lab
190
Klaus Kaestner, Upenn
47
KPMP
19
Xin Sun, UCSD
Audit category:
30
audit script error
award.project!
AMP
T1D
month_released!
March, 2023
May, 2022
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
256 results
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single cell RNA-seq
total RNA-seq
snATAC-seq
ATAC-seq
WGBS
Hi-C
primary cell
Langerhans cell
52
27
pancreatic alpha cell
42
7
6
1
exocrine cell
39
pancreatic beta cell
11
3
1
pancreatic acinar cell
1
tissue
kidney
47
lung
9
10
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