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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
107
single cell RNA-seq
105
total RNA-seq
50
ATAC-seq
49
snATAC-seq
44
ChIP-seq
41
WGBS
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
212
Transcription
99
DNA accessibility
44
DNA binding
41
DNA methylation
4
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
narrow histone mark
Date released
134
May, 2022
112
May, 2021
47
September, 2023
45
May, 2020
23
February, 2023
19
April, 2020
18
September, 2020
16
January, 2021
4
March, 2020
3
October, 2022
1
March, 2023
Available data
153
zippedFastqFolder
152
bigWig
142
bam
fastq
98
tsv
44
bed narrowPeak
44
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
421
Homo sapiens
Biosample type
320
primary cell
95
tissue
7
cell line
Organ
113
pancreas
85
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
200
T1D
155
HPAP
47
KPMP
19
LungMap
community
1
ITG
Genome assembly (visualization)
145
hg19
143
GRCh38
Lab
196
Kyle Gaulton, UCSD
155
Klaus Kaestner, Upenn
47
KPMP
19
Xin Sun, UCSD
4
AMP-T2D consortium
1
ITG
Audit category:
7
inconsistent ontology term
3
audit script error
award.project!
AMP
community
files.file_type!
fastq
month_released!
February, 2021
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
422 results
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single cell RNA-seq
total RNA-seq
ATAC-seq
snATAC-seq
ChIP-seq
WGBS
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
44
1
Langerhans cell
51
21
pancreatic alpha cell
22
25
1
pancreatic beta cell
13
16
1
peripheral blood mononuclear cell
8
+ See 36 more…
tissue
kidney
47
islet of Langerhans
7
11
6
lung
9
10
pancreas
4
thymus
1
cell line
EndoC_BH1
2
3
2
See all biosamples
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