Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
107
single cell RNA-seq
103
total RNA-seq
86
ChIP-seq
49
snATAC-seq
17
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
Hi-C
Assay category
210
Transcription
86
DNA binding
60
DNA accessibility
1
3D chromatin structure
Target of assay
86
histone
86
histone modification
44
broad histone mark
42
narrow histone mark
Date released
152
May, 2021
54
May, 2022
47
September, 2023
45
May, 2020
23
February, 2023
19
April, 2020
18
September, 2020
16
January, 2021
4
March, 2020
1
March, 2023
Available data
182
bam
182
bigWig
fastq
96
tsv
86
bed narrowPeak
84
tagAlign
73
zippedFastqFolder
1
hic
Organism
378
Homo sapiens
Biosample type
277
primary cell
97
tissue
5
cell line
Organ
117
pancreas
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
240
T1D
72
HPAP
47
KPMP
19
LungMap
community
1
ITG
Genome assembly (visualization)
183
GRCh38
182
hg19
Lab
236
Kyle Gaulton, UCSD
72
Klaus Kaestner, Upenn
47
KPMP
19
Xin Sun, UCSD
4
AMP-T2D consortium
1
ITG
Audit category:
5
inconsistent ontology term
award.project!
AMP
community
files.file_type!
fastq
organ_slims!
epithelium
BIOSAMPLE
ASSAY
379 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
Hi-C
primary cell
monocyte
53
84
1
Langerhans cell
51
21
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
+ See 33 more…
tissue
kidney
47
islet of Langerhans
7
2
6
11
lung
9
10
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples
Download