Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
62
total RNA-seq
60
ATAC-seq
47
WGBS
10
snATAC-seq
4
ChIP-seq
3
Hi-C
Assay category
70
DNA accessibility
62
Transcription
47
DNA methylation
4
DNA binding
3
3D chromatin structure
Target of assay
4
histone
4
histone modification
4
narrow histone mark
Date released
80
May, 2022
55
February, 2023
19
September, 2020
8
January, 2021
7
August, 2020
7
March, 2020
6
February, 2021
3
October, 2022
1
May, 2021
Available data
80
zippedFastqFolder
69
fastq
16
bigWig
8
tsv
6
bam
4
bed narrowPeak
3
bedpe bed3+
3
cool
3
hic
Organism
186
Homo sapiens
Biosample type
152
primary cell
30
tissue
4
cell line
Organ
186
pancreas
156
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
152
HPAP
34
T1D
Genome assembly (visualization)
16
GRCh38
9
hg19
Lab
152
Klaus Kaestner, Upenn
26
Kyle Gaulton, UCSD
8
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
3
audit script error
award.project!
AMP
community
month_released!
February, 2020
November, 2018
BIOSAMPLE
ASSAY
186 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
WGBS
snATAC-seq
ChIP-seq
Hi-C
primary cell
pancreatic alpha cell
42
29
31
1
pancreatic beta cell
11
16
16
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
7
11
6
2
pancreas
4
cell line
EndoC_BH1
2
2
Download