Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 195total RNA-seq
  • 141single cell RNA-seq
  • 86ChIP-seq
  • 76snATAC-seq
  • 60ATAC-seq
  • 47WGBS
  • 17pCHi-C
  • 4Hi-C
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
Assay category
  • 338Transcription
  • 136DNA accessibility
  • 86DNA binding
  • 47DNA methylation
  • 43D chromatin structure
Target of assay
  • 86histone
  • 86histone modification
  • 44broad histone mark
  • 42narrow histone mark
Date released
  • 152May, 2021
  • 134May, 2022
  • 94February, 2023
  • 59September, 2020
  • 47September, 2023
  • 45February, 2021
  • 45May, 2020
  • 19April, 2020
  • 16January, 2021
  • 7August, 2020
  • 4March, 2020
  • 3March, 2023
  • 3October, 2022
Available data
  • 192bigWig
  • 182bam
  • 169fastq
  • 153zippedFastqFolder
  • 102tsv
  • 86bed narrowPeak
  • 84tagAlign
  • 4hic
  • 3bedpe bed3+
  • 3cool
Organism
  • 625Homo sapiens
Biosample type
  • 529primary cell
  • 97tissue
  • cell line
  • 2stem cell
Organ
  • 182pancreas
  • 152epithelium
  • 47kidney
  • 19lung
  • 8blood
  • 8bodily fluid
  • 1bone element
  • 1bone marrow
  • 1connective tissue
  • 1thymus
Project
  • AMP
  • 324HPAP
  • 235T1D
  • 47KPMP
  • 19LungMap
  • 2community
  • 1ITG
Genome assembly (visualization)
  • 193GRCh38
  • 185hg19
Lab
  • 324Klaus Kaestner, Upenn
  • 231Kyle Gaulton, UCSD
  • 47KPMP
  • 19Xin Sun, UCSD
  • 4AMP-T2D consortium
  • 2Anna Gloyn, Oxford
  • 1ITG
Audit category:
  • 30audit script error
  • 5inconsistent ontology term
award.project!
  • AMP
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

628 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
CRISPR RNA-seq
CRISPRi RNA-seq
primary cell
monocyte53841
Langerhans cell8548
pancreatic alpha cell4229311
pancreatic beta cell1116161
exocrine cell39
tissue
kidney47
islet of Langerhans72611
lung910
pancreas4
thymus1
stem cell
SB Ad3.111
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego