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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
single cell RNA-seq
20
snATAC-seq
11
ATAC-seq
9
total RNA-seq
4
ChIP-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
pCHi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
69
Transcription
31
DNA accessibility
4
DNA binding
Target of assay
4
histone
4
histone modification
4
narrow histone mark
Date released
47
September, 2023
23
February, 2023
19
April, 2020
8
January, 2021
7
March, 2020
4
March, 2023
2
May, 2021
Available data
6
bam
6
bigWig
4
bed narrowPeak
2
tsv
Organism
105
Homo sapiens
Biosample type
primary cell
97
tissue
11
cell line
2
stem cell
Organ
47
kidney
34
pancreas
19
lung
4
epithelium
1
thymus
Project
AMP
47
KPMP
40
T1D
19
LungMap
4
community
Genome assembly (visualization)
6
GRCh38
6
hg19
Lab
47
KPMP
32
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
8
AMP-T2D consortium
4
Anna Gloyn, Oxford
Audit category:
4
inconsistent ontology term
award.project!
AMP
biosample_type!
primary cell
BIOSAMPLE
ASSAY
110 results
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single cell RNA-seq
snATAC-seq
ATAC-seq
total RNA-seq
ChIP-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
pCHi-C
shRNA RNA-seq
siRNA RNA-seq
tissue
kidney
47
islet of Langerhans
6
11
7
2
lung
9
10
pancreas
4
thymus
1
cell line
EndoC_BH1
2
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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