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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
146
total RNA-seq
141
single cell RNA-seq
76
snATAC-seq
53
ATAC-seq
47
WGBS
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
3
ChIP-seq
2
HiChIP
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
289
Transcription
129
DNA accessibility
47
DNA methylation
4
3D chromatin structure
3
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
Date released
May, 2021
134
May, 2022
99
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
19
April, 2020
16
January, 2021
August, 2020
7
March, 2020
3
March, 2023
3
October, 2022
Available data
162
fastq
153
zippedFastqFolder
53
bigWig
53
tsv
50
bam
4
hic
3
bed narrowPeak
3
bedpe bed3+
3
cool
Organism
474
Homo sapiens
Biosample type
371
primary cell
96
tissue
10
cell line
stem cell
Organ
178
pancreas
148
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
Project
AMP
317
HPAP
91
T1D
47
KPMP
19
LungMap
2
community
1
ITG
Genome assembly (visualization)
54
GRCh38
53
hg19
Lab
317
Klaus Kaestner, Upenn
84
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
7
AMP-T2D consortium
2
Anna Gloyn, Oxford
1
ITG
Audit category:
30
audit script error
7
inconsistent ontology term
award.project!
AMP
biosample_type!
stem cell
files.file_type!
txt
month_released!
August, 2020
May, 2021
BIOSAMPLE
ASSAY
477 results
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Clear Filters
total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
Hi-C
CRISPR genome editing followed by DNA sequencing
ChIP-seq
HiChIP
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
24
31
1
pancreatic beta cell
11
14
16
1
exocrine cell
39
peripheral blood mononuclear cell
8
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tissue
kidney
47
islet of Langerhans
7
6
11
2
lung
9
10
pancreas
4
cell line
EndoC_BH1
2
3
1
2
EndoC-BH1
1
1
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