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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
total RNA-seq
1
ChIP-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
4
Transcription
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
5
February, 2023
3
March, 2020
2
March, 2023
May, 2021
Available data
3
bam
3
bigWig
2
tsv
1
bed narrowPeak
Organism
8
Homo sapiens
Biosample type
378
primary cell
49
tissue
10
cell line
2
stem cell
Organ
3
epithelium
3
pancreas
Project
AMP
8
T1D
2
community
Genome assembly (visualization)
3
GRCh38
3
hg19
Lab
5
Kyle Gaulton, UCSD
3
AMP-T2D consortium
2
Anna Gloyn, Oxford
Audit category:
3
inconsistent ontology term
award.project!
AMP
files.file_type!
tagAlign
month_released!
May, 2021
organ_slims!
kidney
BIOSAMPLE
ASSAY
10 results
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CRISPR genome editing followed by DNA sequencing
HiChIP
total RNA-seq
ChIP-seq
shRNA RNA-seq
siRNA RNA-seq
cell line
EndoC_BH1
3
2
2
1
EndoC-BH1
1
1
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