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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
ChIP-seq
51
total RNA-seq
17
pCHi-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
85
DNA binding
55
Transcription
1
3D chromatin structure
Target of assay
85
histone
85
histone modification
44
broad histone mark
41
narrow histone mark
Date released
153
May, 2021
134
May, 2022
99
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
19
April, 2020
16
January, 2021
7
August, 2020
7
March, 2020
5
March, 2023
3
October, 2022
Available data
136
bam
136
bigWig
85
bed narrowPeak
84
tagAlign
51
tsv
1
hic
Organism
154
Homo sapiens
Biosample type
152
primary cell
3
cell line
2
stem cell
1
tissue
Organ
1
bone element
1
bone marrow
1
connective tissue
1
epithelium
1
pancreas
1
thymus
Project
AMP
153
T1D
4
community
1
ITG
Genome assembly (visualization)
137
GRCh38
136
hg19
Lab
152
Kyle Gaulton, UCSD
4
Anna Gloyn, Oxford
1
AMP-T2D consortium
1
ITG
Audit category:
2
inconsistent ontology term
award.project!
AMP
files.file_type!
bed bed3+
month_released!
September, 2017
BIOSAMPLE
ASSAY
158 results
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ChIP-seq
total RNA-seq
pCHi-C
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
84
51
1
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
+ See 11 more…
cell line
EndoC-BH1
1
1
EndoC_BH1
1
stem cell
SB Ad3.1
1
1
tissue
thymus
1
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