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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
total RNA-seq
98
single cell RNA-seq
88
ChIP-seq
50
ATAC-seq
41
WGBS
39
snATAC-seq
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
203
Transcription
89
DNA accessibility
88
DNA binding
41
DNA methylation
4
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
153
May, 2021
134
May, 2022
47
September, 2023
45
May, 2020
23
February, 2023
April, 2020
18
September, 2020
16
January, 2021
7
March, 2020
3
October, 2022
1
March, 2023
Available data
196
bigWig
186
bam
fastq
153
zippedFastqFolder
104
tsv
88
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
447
Homo sapiens
Biosample type
360
primary cell
78
tissue
9
cell line
Organ
117
pancreas
87
epithelium
47
kidney
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
244
T1D
155
HPAP
47
KPMP
1
ITG
Genome assembly (visualization)
189
hg19
187
GRCh38
Lab
236
Kyle Gaulton, UCSD
155
Klaus Kaestner, Upenn
47
KPMP
8
AMP-T2D consortium
1
ITG
Audit category:
9
inconsistent ontology term
3
audit script error
award.project!
AMP
files.file_type!
fastq
month_released!
April, 2020
BIOSAMPLE
ASSAY
447 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
ATAC-seq
WGBS
snATAC-seq
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
84
1
Langerhans cell
51
21
pancreatic alpha cell
22
25
1
pancreatic beta cell
13
16
1
peripheral blood mononuclear cell
8
+ See 36 more…
tissue
kidney
47
islet of Langerhans
7
2
11
6
pancreas
4
thymus
1
cell line
EndoC_BH1
2
2
3
2
See all biosamples
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