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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
146
total RNA-seq
141
single cell RNA-seq
76
snATAC-seq
60
ATAC-seq
47
WGBS
3
CRISPR genome editing followed by DNA sequencing
3
ChIP-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
291
Transcription
136
DNA accessibility
47
DNA methylation
3
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
Date released
May, 2021
134
May, 2022
99
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
19
April, 2020
16
January, 2021
7
August, 2020
7
March, 2020
4
March, 2023
Available data
169
fastq
153
zippedFastqFolder
60
bigWig
53
tsv
50
bam
hic
3
bed narrowPeak
3
bedpe bed3+
3
cool
Organism
477
Homo sapiens
Biosample type
374
primary cell
96
tissue
10
cell line
2
stem cell
Organ
182
pancreas
152
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
Project
AMP
321
HPAP
91
T1D
47
KPMP
19
LungMap
4
community
Genome assembly (visualization)
60
GRCh38
50
hg19
Lab
321
Klaus Kaestner, Upenn
84
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
7
AMP-T2D consortium
4
Anna Gloyn, Oxford
Audit category:
27
audit script error
7
inconsistent ontology term
award.project!
AMP
files.file_type!
hic
month_released!
July, 2019
May, 2021
BIOSAMPLE
ASSAY
482 results
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Clear Filters
total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
CRISPR genome editing followed by DNA sequencing
ChIP-seq
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
pancreatic beta cell
11
16
16
exocrine cell
39
peripheral blood mononuclear cell
8
+ See 26 more…
tissue
kidney
47
islet of Langerhans
7
6
11
2
lung
9
10
pancreas
4
cell line
EndoC_BH1
2
3
1
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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