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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
total RNA-seq
56
single cell RNA-seq
28
snATAC-seq
17
pCHi-C
11
ATAC-seq
4
ChIP-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
165
Transcription
39
DNA accessibility
4
DNA binding
1
3D chromatin structure
Target of assay
4
histone
4
histone modification
4
narrow histone mark
Date released
69
May, 2021
47
September, 2023
45
May, 2020
23
February, 2023
19
April, 2020
16
January, 2021
7
March, 2020
5
March, 2023
Available data
186
bam
186
bigWig
98
tsv
88
bed narrowPeak
tagAlign
1
hic
Organism
226
Homo sapiens
Biosample type
121
primary cell
97
tissue
11
cell line
2
stem cell
Organ
47
kidney
34
pancreas
19
lung
8
blood
8
bodily fluid
4
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
160
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
103
GRCh38
102
hg19
Lab
Klaus Kaestner, Upenn
152
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
8
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
9
inconsistent ontology term
award.project!
AMP
files.file_type!
tagAlign
lab.title!
Klaus Kaestner, Upenn
month_released!
September, 2020
organ_slims!
vein
BIOSAMPLE
ASSAY
231 results
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Clear Filters
total RNA-seq
single cell RNA-seq
snATAC-seq
pCHi-C
ATAC-seq
ChIP-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
+ See 32 more…
tissue
kidney
47
islet of Langerhans
7
6
11
2
lung
9
10
pancreas
4
thymus
1
cell line
EndoC_BH1
2
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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