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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
88
ChIP-seq
80
single cell RNA-seq
45
snATAC-seq
21
ATAC-seq
17
pCHi-C
6
WGBS
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
Assay category
277
Transcription
88
DNA binding
66
DNA accessibility
6
DNA methylation
3
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
153
May, 2021
99
February, 2023
47
September, 2023
45
February, 2021
45
May, 2020
40
September, 2020
April, 2020
16
January, 2021
7
August, 2020
7
March, 2020
March, 2023
3
October, 2022
Available data
196
bigWig
186
bam
169
fastq
zippedFastqFolder
104
tsv
88
bed narrowPeak
84
tagAlign
3
bedpe bed3+
3
cool
3
hic
Organism
462
Homo sapiens
Biosample type
375
primary cell
78
tissue
9
cell line
Organ
106
pancreas
76
epithelium
47
kidney
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
244
T1D
171
HPAP
47
KPMP
Genome assembly (visualization)
196
GRCh38
189
hg19
Lab
236
Kyle Gaulton, UCSD
171
Klaus Kaestner, Upenn
47
KPMP
8
AMP-T2D consortium
Audit category:
30
audit script error
9
inconsistent ontology term
award.project!
AMP
files.file_type!
zippedFastqFolder
month_released!
April, 2020
March, 2023
BIOSAMPLE
ASSAY
462 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
pCHi-C
WGBS
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
primary cell
monocyte
53
84
1
Langerhans cell
33
27
pancreatic alpha cell
42
7
6
1
exocrine cell
39
pancreatic beta cell
11
3
1
+ See 36 more…
tissue
kidney
47
islet of Langerhans
7
2
6
11
pancreas
4
thymus
1
cell line
EndoC_BH1
2
2
3
2
See all biosamples
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