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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
total RNA-seq
85
ChIP-seq
10
ATAC-seq
Assay category
96
Transcription
85
DNA binding
10
DNA accessibility
Target of assay
85
histone
85
histone modification
44
broad histone mark
41
narrow histone mark
Date released
136
May, 2021
45
May, 2020
7
August, 2020
March, 2020
3
September, 2020
Available data
191
bigWig
181
bam
169
fastq
153
zippedFastqFolder
102
tsv
85
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
191
Homo sapiens
Biosample type
190
primary cell
1
cell line
Organ
11
epithelium
11
pancreas
Project
AMP
181
T1D
10
HPAP
Genome assembly (visualization)
191
GRCh38
181
hg19
Lab
180
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
1
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
award.project!
AMP
files.file_type!
hdf5
month_released!
March, 2020
September, 2017
BIOSAMPLE
ASSAY
191 results
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total RNA-seq
ChIP-seq
ATAC-seq
primary cell
monocyte
53
84
pancreatic alpha cell
7
pancreatic beta cell
3
B cell
2
CD8-positive, alpha-beta T cell
2
+ See 22 more…
cell line
EndoC_BH1
1
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