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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
total RNA-seq
10
ATAC-seq
4
ChIP-seq
Assay category
98
Transcription
10
DNA accessibility
4
DNA binding
Target of assay
4
histone
4
histone modification
4
narrow histone mark
Date released
52
May, 2021
45
May, 2020
7
August, 2020
5
March, 2020
3
September, 2020
Available data
196
bigWig
186
bam
169
fastq
153
zippedFastqFolder
104
tsv
88
bed narrowPeak
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
112
Homo sapiens
Biosample type
106
primary cell
4
cell line
2
tissue
Organ
16
pancreas
14
epithelium
Project
AMP
102
T1D
10
HPAP
Genome assembly (visualization)
112
GRCh38
102
hg19
Lab
96
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
6
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
award.project!
AMP
files.file_type!
ibed
tagAlign
organ_slims!
skin of body
BIOSAMPLE
ASSAY
112 results
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total RNA-seq
ATAC-seq
ChIP-seq
primary cell
monocyte
53
pancreatic alpha cell
7
pancreatic beta cell
3
B cell
2
CD8-positive, alpha-beta T cell
2
+ See 22 more…
cell line
EndoC_BH1
2
2
tissue
islet of Langerhans
2
See all biosamples
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