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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 181total RNA-seq
  • 139single cell RNA-seq
  • 88ChIP-seq
  • 76snATAC-seq
  • 60ATAC-seq
  • 41WGBS
  • 17pCHi-C
  • 4Hi-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
Assay category
  • 324Transcription
  • 136DNA accessibility
  • 88DNA binding
  • 41DNA methylation
  • 43D chromatin structure
Target of assay
  • 88histone
  • 88histone modification
  • 44broad histone mark
  • 44narrow histone mark
Date released
  • 153May, 2021
  • 134May, 2022
  • 99February, 2023
  • 47September, 2023
  • 45May, 2020
  • 41September, 2020
  • 39February, 2021
  • 19April, 2020
  • 16January, 2021
  • 7August, 2020
  • 7March, 2020
  • 5March, 2023
  • 3October, 2022
Available data
  • 196bigWig
  • 186bam
  • 151zippedFastqFolder
  • 147fastq
  • 98tsv
  • 88bed narrowPeak
  • 84tagAlign
  • 4hic
  • 3bedpe bed3+
  • 3cool
Organism
  • 610Homo sapiens
Biosample type
  • 505primary cell
  • 97tissue
  • 11cell line
  • 2stem cell
Organ
  • 164pancreas
  • 134epithelium
  • 47kidney
  • 19lung
  • 8blood
  • 8bodily fluid
  • 1bone element
  • 1bone marrow
  • 1connective tissue
  • 1thymus
Project
  • AMP
  • 300HPAP
  • 244T1D
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 197GRCh38
  • 189hg19
Lab
  • 300Klaus Kaestner, Upenn
  • 236Kyle Gaulton, UCSD
  • 47KPMP
  • 19Xin Sun, UCSD
  • 8AMP-T2D consortium
  • 4Anna Gloyn, Oxford
  • 1ITG
Audit category:
  • 30audit script error
  • 9inconsistent ontology term
award.project!
  • AMP
files.read_length!
  • 100
BIOSAMPLE
ASSAY

615 results

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Clear Filters
total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte53841
Langerhans cell8348
pancreatic alpha cell2729251
pancreatic beta cell1016161
exocrine cell39
tissue
kidney47
islet of Langerhans72611
lung910
pancreas4
thymus1
cell line
EndoC_BH12232
EndoC-BH111
stem cell
SB Ad3.111
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