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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
88
ChIP-seq
74
single cell RNA-seq
28
snATAC-seq
17
pCHi-C
11
ATAC-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
275
Transcription
88
DNA binding
39
DNA accessibility
4
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
153
May, 2021
99
February, 2023
47
September, 2023
45
May, 2020
34
September, 2020
19
April, 2020
16
January, 2021
7
March, 2020
5
March, 2023
3
October, 2022
Available data
186
bam
186
bigWig
98
tsv
92
fastq
88
bed narrowPeak
84
tagAlign
18
zippedFastqFolder
4
hic
3
bedpe bed3+
3
cool
Organism
423
Homo sapiens
Biosample type
318
primary cell
97
tissue
11
cell line
2
stem cell
Organ
90
pancreas
60
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
244
T1D
113
HPAP
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
189
hg19
187
GRCh38
Lab
236
Kyle Gaulton, UCSD
113
Klaus Kaestner, Upenn
47
KPMP
19
Xin Sun, UCSD
8
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
9
inconsistent ontology term
3
audit script error
award.project!
AMP
files.run_type!
paired-ended
BIOSAMPLE
ASSAY
428 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
pCHi-C
ATAC-seq
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
pancreatic alpha cell
42
1
exocrine cell
39
Langerhans cell
18
pancreatic beta cell
11
1
+ See 37 more…
tissue
kidney
47
islet of Langerhans
7
2
6
11
lung
9
10
pancreas
4
thymus
1
cell line
EndoC_BH1
2
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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