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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
193
total RNA-seq
108
single cell RNA-seq
84
ChIP-seq
55
snATAC-seq
17
pCHi-C
14
ATAC-seq
6
WGBS
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
301
Transcription
84
DNA binding
69
DNA accessibility
6
DNA methylation
4
3D chromatin structure
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
152
May, 2021
May, 2022
99
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
19
April, 2020
16
January, 2021
August, 2020
3
October, 2022
1
March, 2023
Available data
183
bigWig
180
bam
162
fastq
102
tsv
84
bed narrowPeak
84
tagAlign
19
zippedFastqFolder
4
hic
3
bedpe bed3+
3
cool
Organism
485
Homo sapiens
Biosample type
388
primary cell
93
tissue
5
cell line
Organ
91
pancreas
65
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
236
T1D
183
HPAP
47
KPMP
19
LungMap
1
ITG
Genome assembly (visualization)
184
GRCh38
183
hg19
Lab
236
Kyle Gaulton, UCSD
183
Klaus Kaestner, Upenn
47
KPMP
19
Xin Sun, UCSD
AMP-T2D consortium
Anna Gloyn, Oxford
1
ITG
Audit category:
30
audit script error
5
inconsistent ontology term
award.project!
AMP
lab.title!
AMP-T2D consortium
Anna Gloyn, Oxford
month_released!
August, 2020
May, 2022
BIOSAMPLE
ASSAY
486 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
ATAC-seq
WGBS
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
84
1
Langerhans cell
52
27
pancreatic alpha cell
42
2
6
1
exocrine cell
39
pancreatic beta cell
11
1
1
+ See 37 more…
tissue
kidney
47
islet of Langerhans
5
6
11
lung
9
10
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
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