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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
single cell RNA-seq
58
snATAC-seq
39
total RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
137
Transcription
58
DNA accessibility
1
3D chromatin structure
Date released
54
May, 2022
40
September, 2020
39
February, 2021
39
February, 2023
19
April, 2020
5
March, 2023
Available data
100
fastq
73
zippedFastqFolder
1
hic
Organism
191
Homo sapiens
Biosample type
173
primary cell
19
tissue
2
cell line
2
stem cell
Organ
pancreas
156
epithelium
kidney
19
lung
Project
AMP
172
HPAP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
1
GRCh38
Lab
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
1
ITG
Audit category:
27
audit script error
award.project!
AMP
lab.title!
Kyle Gaulton, UCSD
organ_slims!
kidney
pancreas
BIOSAMPLE
ASSAY
196 results
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single cell RNA-seq
snATAC-seq
total RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
48
exocrine cell
39
chondrocytes
1
tissue
lung
9
10
cell line
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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