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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
total RNA-seq
84
ChIP-seq
18
snATAC-seq
17
pCHi-C
9
single cell RNA-seq
Assay category
105
Transcription
84
DNA binding
18
DNA accessibility
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
152
May, 2021
45
May, 2020
February, 2023
19
April, 2020
8
January, 2021
Available data
180
bam
180
bigWig
96
tsv
84
bed narrowPeak
84
tagAlign
Organism
223
Homo sapiens
Biosample type
196
primary cell
28
tissue
Organ
19
lung
blood
8
bodily fluid
8
pancreas
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
205
T1D
AMP
19
LungMap
Genome assembly (visualization)
180
GRCh38
180
hg19
Lab
248
Klaus Kaestner, Upenn
205
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
5
inconsistent ontology term
award.project!
AMP
lab.title!
AMP-T2D consortium
month_released!
February, 2023
organ_slims!
blood
BIOSAMPLE
ASSAY
224 results
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total RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
single cell RNA-seq
primary cell
monocyte
53
84
1
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
+ See 30 more…
tissue
lung
10
9
islet of Langerhans
4
pancreas
4
thymus
1
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