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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ATAC-seq
47
WGBS
46
total RNA-seq
10
snATAC-seq
4
ChIP-seq
3
Hi-C
Assay category
67
DNA accessibility
47
DNA methylation
46
Transcription
4
DNA binding
3
3D chromatin structure
Target of assay
4
histone
4
histone modification
4
narrow histone mark
Date released
80
May, 2022
55
February, 2023
September, 2020
8
January, 2021
7
August, 2020
7
March, 2020
6
February, 2021
3
October, 2022
1
May, 2021
Available data
80
zippedFastqFolder
50
fastq
13
bigWig
8
tsv
6
bam
4
bed narrowPeak
3
bedpe bed3+
3
cool
3
hic
Organism
167
Homo sapiens
Biosample type
133
primary cell
30
tissue
4
cell line
Organ
167
pancreas
137
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
133
HPAP
34
T1D
Genome assembly (visualization)
13
GRCh38
9
hg19
Lab
133
Klaus Kaestner, Upenn
26
Kyle Gaulton, UCSD
8
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
3
audit script error
award.project!
AMP
month_released!
December, 2019
September, 2020
organ_slims!
nerve
BIOSAMPLE
ASSAY
167 results
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Clear Filters
ATAC-seq
WGBS
total RNA-seq
snATAC-seq
ChIP-seq
Hi-C
primary cell
pancreatic alpha cell
27
31
27
1
pancreatic beta cell
15
16
10
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
11
7
6
2
pancreas
4
cell line
EndoC_BH1
2
2
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