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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
single cell RNA-seq
65
total RNA-seq
58
snATAC-seq
49
ATAC-seq
47
WGBS
4
Hi-C
3
ChIP-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
210
Transcription
107
DNA accessibility
47
DNA methylation
4
3D chromatin structure
3
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
Date released
May, 2021
134
May, 2022
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
19
April, 2020
January, 2021
7
August, 2020
7
March, 2020
5
March, 2023
3
October, 2022
Available data
153
zippedFastqFolder
93
fastq
60
bigWig
53
tsv
50
bam
4
hic
3
bed narrowPeak
3
bedpe bed3+
3
cool
Organism
366
Homo sapiens
Biosample type
294
primary cell
70
tissue
5
cell line
2
stem cell
Organ
122
pancreas
118
epithelium
47
kidney
19
lung
Project
AMP
248
HPAP
52
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
61
GRCh38
53
hg19
Lab
248
Klaus Kaestner, Upenn
47
KPMP
45
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
7
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
30
audit script error
7
inconsistent ontology term
award.project!
AMP
month_released!
February, 2023
January, 2021
May, 2021
BIOSAMPLE
ASSAY
371 results
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single cell RNA-seq
total RNA-seq
snATAC-seq
ATAC-seq
WGBS
Hi-C
ChIP-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
15
29
31
1
pancreatic beta cell
1
16
16
1
pancreatic acinar cell
4
1
B cell
2
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tissue
kidney
47
lung
9
10
islet of Langerhans
2
2
cell line
EndoC_BH1
2
1
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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