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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
total RNA-seq
108
single cell RNA-seq
88
ChIP-seq
52
snATAC-seq
17
pCHi-C
10
ATAC-seq
6
WGBS
4
Hi-C
Assay category
224
Transcription
88
DNA binding
62
DNA accessibility
6
DNA methylation
4
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
153
May, 2021
May, 2022
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
18
April, 2020
16
January, 2021
7
August, 2020
7
March, 2020
3
October, 2022
1
March, 2023
Available data
196
bigWig
186
bam
104
tsv
93
fastq
88
bed narrowPeak
84
tagAlign
19
zippedFastqFolder
4
hic
3
bedpe bed3+
3
cool
Organism
401
Homo sapiens
Biosample type
319
primary cell
78
tissue
4
cell line
Organ
51
pancreas
47
kidney
39
epithelium
18
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
221
T1D
114
HPAP
47
KPMP
18
LungMap
1
ITG
Genome assembly (visualization)
197
GRCh38
189
hg19
Lab
213
Kyle Gaulton, UCSD
114
Klaus Kaestner, Upenn
47
KPMP
18
Xin Sun, UCSD
8
AMP-T2D consortium
1
ITG
Audit category:
30
audit script error
9
inconsistent ontology term
award.project!
AMP
month_released!
February, 2023
May, 2022
BIOSAMPLE
ASSAY
401 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
ATAC-seq
WGBS
Hi-C
primary cell
monocyte
53
84
1
Langerhans cell
52
27
pancreatic alpha cell
15
7
6
1
peripheral blood mononuclear cell
8
pancreatic beta cell
1
3
1
+ See 36 more…
tissue
kidney
47
lung
9
9
islet of Langerhans
2
2
4
pancreas
4
thymus
1
cell line
EndoC_BH1
2
2
See all biosamples
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