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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
single cell RNA-seq
135
total RNA-seq
84
ChIP-seq
58
snATAC-seq
16
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
280
Transcription
84
DNA binding
58
DNA accessibility
1
3D chromatin structure
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
151
May, 2021
54
May, 2022
47
September, 2023
45
May, 2020
44
February, 2023
40
September, 2020
39
February, 2021
19
April, 2020
5
March, 2023
Available data
180
bam
180
bigWig
100
fastq
96
tsv
84
bed narrowPeak
84
tagAlign
73
zippedFastqFolder
1
hic
Organism
439
Homo sapiens
Biosample type
368
primary cell
67
tissue
7
cell line
2
stem cell
Organ
pancreas
156
epithelium
47
kidney
19
lung
8
blood
bodily fluid
1
bone element
1
bone marrow
connective tissue
1
thymus
Project
AMP
201
T1D
172
HPAP
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
181
GRCh38
180
hg19
Lab
201
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
47
KPMP
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
1
ITG
Audit category:
27
audit script error
5
inconsistent ontology term
award.project!
AMP
organ_slims!
bodily fluid
connective tissue
pancreas
BIOSAMPLE
ASSAY
444 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
Langerhans cell
85
48
exocrine cell
39
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
+ See 32 more…
tissue
kidney
47
lung
9
10
thymus
1
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
See all biosamples
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