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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 141single cell RNA-seq
  • 135total RNA-seq
  • 84ChIP-seq
  • 66snATAC-seq
  • 17pCHi-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1Hi-C
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
Assay category
  • 280Transcription
  • 84DNA binding
  • 66DNA accessibility
  • 13D chromatin structure
Target of assay
  • 84histone
  • 84histone modification
  • 44broad histone mark
  • 40narrow histone mark
Date released
  • 152May, 2021
  • 54May, 2022
  • 47September, 2023
  • 45May, 2020
  • 44February, 2023
  • 40September, 2020
  • 39February, 2021
  • 19April, 2020
  • 8January, 2021
  • 5March, 2023
Available data
  • 180bam
  • 180bigWig
  • 100fastq
  • 96tsv
  • 84bed narrowPeak
  • 84tagAlign
  • 73zippedFastqFolder
  • 1hic
Organism
  • 448Homo sapiens
Biosample type
  • 377primary cell
  • 67tissue
  • 7cell line
  • 2stem cell
Organ
  • pancreas
  • 156epithelium
  • 47kidney
  • 19lung
  • 8blood
  • 8bodily fluid
  • 1bone element
  • 1bone marrow
  • 1connective tissue
  • 1thymus
Project
  • AMP
  • 210T1D
  • 172HPAP
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 181GRCh38
  • 180hg19
Lab
  • 210Kyle Gaulton, UCSD
  • 172Klaus Kaestner, Upenn
  • 47KPMP
  • 19Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
  • 1ITG
Audit category:
  • 27audit script error
  • 5inconsistent ontology term
award.project!
  • AMP
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

453 results

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Clear Filters
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte53841
Langerhans cell8548
exocrine cell39
peripheral blood mononuclear cell8
B cell21
tissue
kidney47
lung910
thymus1
cell line
EndoC_BH132
EndoC-BH111
stem cell
SB Ad3.111
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