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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
49
ATAC-seq
3
Hi-C
2
ChIP-seq
Assay category
55
Transcription
49
DNA accessibility
3
3D chromatin structure
2
DNA binding
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
39
May, 2022
37
February, 2023
19
September, 2020
7
August, 2020
3
March, 2020
3
October, 2022
1
May, 2021
Available data
63
fastq
39
zippedFastqFolder
14
bigWig
4
bam
3
bedpe bed3+
3
cool
3
hic
2
bed narrowPeak
2
tsv
Organism
109
Homo sapiens
Biosample type
105
primary cell
4
cell line
Organ
186
pancreas
109
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
105
HPAP
4
T1D
Genome assembly (visualization)
14
GRCh38
7
hg19
Lab
105
Klaus Kaestner, Upenn
4
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
3
audit script error
award.project!
AMP
BIOSAMPLE
ASSAY
109 results
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total RNA-seq
ATAC-seq
Hi-C
ChIP-seq
primary cell
pancreatic alpha cell
42
29
1
pancreatic beta cell
11
16
1
pancreatic acinar cell
4
1
cell line
EndoC_BH1
2
2
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