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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 62total RNA-seq
  • 60ATAC-seq
  • 47WGBS
  • 10snATAC-seq
  • 4ChIP-seq
  • 3Hi-C
Assay category
  • 70DNA accessibility
  • 62Transcription
  • 47DNA methylation
  • 4DNA binding
  • 33D chromatin structure
Target of assay
  • 4histone
  • 4histone modification
  • 4narrow histone mark
Date released
  • 80May, 2022
  • 55February, 2023
  • 19September, 2020
  • 8January, 2021
  • 7August, 2020
  • 7March, 2020
  • 6February, 2021
  • 3October, 2022
  • 1May, 2021
Available data
  • 80zippedFastqFolder
  • 69fastq
  • 16bigWig
  • 8tsv
  • 6bam
  • 4bed narrowPeak
  • 3bedpe bed3+
  • 3cool
  • 3hic
Organism
  • 186Homo sapiens
Biosample type
  • 152primary cell
  • 30tissue
  • 4cell line
Organ
  • 186pancreas
  • 156epithelium
  • 47kidney
  • 19lung
  • 8blood
  • 8bodily fluid
  • 1bone element
  • 1bone marrow
  • 1connective tissue
  • 1thymus
Project
  • AMP
  • 152HPAP
  • 34T1D
Genome assembly (visualization)
  • 16GRCh38
  • 9hg19
Lab
  • 152Klaus Kaestner, Upenn
  • 26Kyle Gaulton, UCSD
  • 8AMP-T2D consortium
Audit category:
  • 4inconsistent ontology term
  • 3audit script error
award.project!
  • AMP
BIOSAMPLE
ASSAY

186 results

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Clear Filters
total RNA-seq
ATAC-seq
WGBS
snATAC-seq
ChIP-seq
Hi-C
primary cell
pancreatic alpha cell4229311
pancreatic beta cell1116161
pancreatic acinar cell41
tissue
islet of Langerhans71162
pancreas4
cell line
EndoC_BH122
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