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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 197total RNA-seq
  • 141single cell RNA-seq
  • 88ChIP-seq
  • 75snATAC-seq
  • 60ATAC-seq
  • 47WGBS
  • 17pCHi-C
  • 4Hi-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
Assay category
  • 338Transcription
  • 135DNA accessibility
  • 88DNA binding
  • 47DNA methylation
  • 43D chromatin structure
Target of assay
  • 88histone
  • 88histone modification
  • 44broad histone mark
  • 44narrow histone mark
Date released
  • 153May, 2021
  • 134May, 2022
  • 99February, 2023
  • 59September, 2020
  • 47September, 2023
  • 45February, 2021
  • 45May, 2020
  • 18April, 2020
  • 16January, 2021
  • 7August, 2020
  • 7March, 2020
  • 3October, 2022
  • 1March, 2023
Available data
  • 196bigWig
  • 186bam
  • 169fastq
  • 153zippedFastqFolder
  • 104tsv
  • 88bed narrowPeak
  • 84tagAlign
  • 4hic
  • 3bedpe bed3+
  • 3cool
Organism
  • 634Homo sapiens
Biosample type
  • 529primary cell
  • 96tissue
  • 9cell line
Organ
  • 186pancreas
  • 156epithelium
  • 47kidney
  • 18lung
  • 8blood
  • 8bodily fluid
  • 1bone element
  • 1bone marrow
  • 1connective tissue
  • 1thymus
Project
  • AMP
  • 324HPAP
  • 244T1D
  • 47KPMP
  • 18LungMap
  • 1ITG
Genome assembly (visualization)
  • 197GRCh38
  • 189hg19
Lab
  • 324Klaus Kaestner, Upenn
  • 236Kyle Gaulton, UCSD
  • 47KPMP
  • 18Xin Sun, UCSD
  • 8AMP-T2D consortium
  • 1ITG
Audit category:
  • 30audit script error
  • 9inconsistent ontology term
award.project!
  • AMP
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634 results

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Clear Filters
total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte53841
Langerhans cell8548
pancreatic alpha cell4229311
pancreatic beta cell1116161
exocrine cell39
tissue
kidney47
islet of Langerhans72611
lung99
pancreas4
thymus1
cell line
EndoC_BH12232
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