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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
152
total RNA-seq
141
single cell RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
snATAC-seq
Assay category
297
Transcription
1
DNA accessibility
Date released
81
February, 2023
56
September, 2020
51
May, 2021
47
September, 2023
33
May, 2022
12
February, 2021
10
April, 2020
4
March, 2020
4
March, 2023
Available data
126
fastq
53
bam
53
bigWig
53
tsv
52
zippedFastqFolder
Organism
293
Homo sapiens
Biosample type
228
primary cell
64
tissue
4
cell line
2
stem cell
Organ
62
pancreas
55
epithelium
47
kidney
10
lung
Project
AMP
177
HPAP
60
T1D
47
KPMP
10
LungMap
4
community
Genome assembly (visualization)
53
GRCh38
53
hg19
Lab
177
Klaus Kaestner, Upenn
56
Kyle Gaulton, UCSD
47
KPMP
10
Xin Sun, UCSD
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
Audit category:
2
inconsistent ontology term
award.project!
AMP
replicates.library.nucleic_acid_term_name!
DNA
BIOSAMPLE
ASSAY
298 results
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total RNA-seq
single cell RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
snATAC-seq
primary cell
Langerhans cell
85
monocyte
51
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
tissue
kidney
47
lung
9
1
islet of Langerhans
7
cell line
EndoC-BH1
1
1
EndoC_BH1
2
stem cell
SB Ad3.1
1
1
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