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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 88ChIP-seq
  • 75snATAC-seq
  • 60ATAC-seq
  • 47WGBS
  • 45total RNA-seq
  • 17pCHi-C
  • 4Hi-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
Assay category
  • 135DNA accessibility
  • 88DNA binding
  • 47DNA methylation
  • 45Transcription
  • 43D chromatin structure
Target of assay
  • 88histone
  • 88histone modification
  • 44broad histone mark
  • 44narrow histone mark
Date released
  • 102May, 2021
  • 101May, 2022
  • 45May, 2020
  • 33February, 2021
  • 18February, 2023
  • 16January, 2021
  • 9April, 2020
  • 7August, 2020
  • 3March, 2020
  • 3October, 2022
  • 3September, 2020
  • 1March, 2023
Available data
  • 143bigWig
  • 133bam
  • 101zippedFastqFolder
  • 88bed narrowPeak
  • 84tagAlign
  • 51tsv
  • 43fastq
  • 4hic
  • 3bedpe bed3+
  • 3cool
Organism
  • 341Homo sapiens
Biosample type
  • 301primary cell
  • 33tissue
  • 7cell line
Organ
  • 124pancreas
  • 101epithelium
  • 9lung
  • 8blood
  • 8bodily fluid
  • 1bone element
  • 1bone marrow
  • 1connective tissue
  • 1thymus
Project
  • AMP
  • 184T1D
  • 147HPAP
  • 9LungMap
  • 1ITG
Genome assembly (visualization)
  • 144GRCh38
  • 136hg19
Lab
  • 180Kyle Gaulton, UCSD
  • 147Klaus Kaestner, Upenn
  • 9Xin Sun, UCSD
  • 4AMP-T2D consortium
  • 1ITG
Audit category:
  • 30audit script error
  • 7inconsistent ontology term
award.project!
  • AMP
BIOSAMPLE
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341 results

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Clear Filters
ChIP-seq
snATAC-seq
ATAC-seq
WGBS
total RNA-seq
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte8421
pancreatic alpha cell29311
Langerhans cell48
pancreatic beta cell16161
peripheral blood mononuclear cell8
tissue
islet of Langerhans2611
lung9
pancreas4
thymus1
cell line
EndoC_BH1232
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