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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 141single cell RNA-seq
  • 126total RNA-seq
  • 72snATAC-seq
  • 49ATAC-seq
  • 47WGBS
  • 40ChIP-seq
  • 13pCHi-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
Assay category
  • 271Transcription
  • 121DNA accessibility
  • 47DNA methylation
  • 40DNA binding
Target of assay
  • 40histone
  • 40histone modification
  • 25broad histone mark
  • 15narrow histone mark
Date released
  • 134May, 2022
  • 81February, 2023
  • 80May, 2021
  • 59September, 2020
  • 47September, 2023
  • 45February, 2021
  • 19April, 2020
  • 14January, 2021
  • 7August, 2020
  • 4March, 2023
  • 4May, 2020
  • 3March, 2020
Available data
  • 169fastq
  • 153zippedFastqFolder
  • 84bigWig
  • 74bam
  • 40bed narrowPeak
  • 40tsv
  • 38tagAlign
Organism
  • 492Homo sapiens
Biosample type
  • 409primary cell
  • 75tissue
  • 11cell line
  • 2stem cell
Organ
  • 161pancreas
  • 153epithelium
  • 47kidney
  • 19lung
  • 6blood
  • 6bodily fluid
  • 1bone element
  • 1bone marrow
  • 1connective tissue
  • 1thymus
Project
  • AMP
  • 321HPAP
  • 106T1D
  • 47KPMP
  • 19LungMap
  • 4community
Genome assembly (visualization)
  • 84GRCh38
  • 74hg19
Lab
  • 321Klaus Kaestner, Upenn
  • 102Kyle Gaulton, UCSD
  • 47KPMP
  • 19Xin Sun, UCSD
  • 4AMP-T2D consortium
  • 4Anna Gloyn, Oxford
Audit category:
  • 27audit script error
  • 5inconsistent ontology term
award.project!
  • AMP
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

497 results

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Clear Filters
single cell RNA-seq
total RNA-seq
snATAC-seq
ATAC-seq
WGBS
ChIP-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell8548
pancreatic alpha cell422931
monocyte28381
pancreatic beta cell111616
exocrine cell39
tissue
kidney47
lung910
islet of Langerhans4
pancreas4
thymus1
cell line
EndoC_BH12232
EndoC-BH111
stem cell
SB Ad3.111
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