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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
single cell RNA-seq
126
total RNA-seq
72
snATAC-seq
49
ATAC-seq
47
WGBS
40
ChIP-seq
13
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
271
Transcription
121
DNA accessibility
47
DNA methylation
40
DNA binding
Target of assay
40
histone
40
histone modification
25
broad histone mark
15
narrow histone mark
Date released
134
May, 2022
81
February, 2023
80
May, 2021
59
September, 2020
47
September, 2023
45
February, 2021
19
April, 2020
14
January, 2021
7
August, 2020
4
March, 2023
4
May, 2020
3
March, 2020
Available data
169
fastq
153
zippedFastqFolder
84
bigWig
74
bam
40
bed narrowPeak
40
tsv
38
tagAlign
Organism
492
Homo sapiens
Biosample type
409
primary cell
75
tissue
11
cell line
2
stem cell
Organ
161
pancreas
153
epithelium
47
kidney
19
lung
6
blood
6
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
321
HPAP
106
T1D
47
KPMP
19
LungMap
4
community
Genome assembly (visualization)
84
GRCh38
74
hg19
Lab
321
Klaus Kaestner, Upenn
102
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
Audit category:
27
audit script error
5
inconsistent ontology term
award.project!
AMP
replication_type!
anisogenic
BIOSAMPLE
ASSAY
497 results
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Clear Filters
single cell RNA-seq
total RNA-seq
snATAC-seq
ATAC-seq
WGBS
ChIP-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
monocyte
28
38
1
pancreatic beta cell
11
16
16
exocrine cell
39
+ See 16 more…
tissue
kidney
47
lung
9
10
islet of Langerhans
4
pancreas
4
thymus
1
cell line
EndoC_BH1
2
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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