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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 195total RNA-seq
  • 141single cell RNA-seq
  • 86ChIP-seq
  • 73snATAC-seq
  • 60ATAC-seq
  • 41WGBS
  • 4Hi-C
  • 4pCHi-C
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
Assay category
  • 340Transcription
  • 133DNA accessibility
  • 86DNA binding
  • 41DNA methylation
  • 43D chromatin structure
Target of assay
  • 86histone
  • 86histone modification
  • 44broad histone mark
  • 42narrow histone mark
Date released
  • 139May, 2021
  • 134May, 2022
  • 96February, 2023
  • 59September, 2020
  • 47September, 2023
  • 45May, 2020
  • 39February, 2021
  • 19April, 2020
  • 13January, 2021
  • 7August, 2020
  • 5March, 2023
  • 4March, 2020
  • 3October, 2022
Available data
  • 192bigWig
  • 182bam
  • 163fastq
  • 153zippedFastqFolder
  • 96tsv
  • 86bed narrowPeak
  • 84tagAlign
  • 4hic
  • 3bedpe bed3+
  • 3cool
Organism
  • 605Homo sapiens
Biosample type
  • 511primary cell
  • 93tissue
  • 4cell line
  • 2stem cell
Organ
  • 173pancreas
  • 146epithelium
  • 47kidney
  • 19lung
  • 8blood
  • 8bodily fluid
Project
  • AMP
  • 318HPAP
  • 221T1D
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 193GRCh38
  • 185hg19
Lab
  • 318Klaus Kaestner, Upenn
  • 217Kyle Gaulton, UCSD
  • 47KPMP
  • 19Xin Sun, UCSD
  • 4AMP-T2D consortium
  • 4Anna Gloyn, Oxford
  • 1ITG
Audit category:
  • 30audit script error
  • 4inconsistent ontology term
award.project!
  • AMP
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

610 results

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Clear Filters
total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte5384
Langerhans cell8548
pancreatic alpha cell4229251
pancreatic beta cell1116161
exocrine cell39
tissue
kidney47
islet of Langerhans72511
lung910
pancreas2
cell line
EndoC-BH111
EndoC_BH12
stem cell
SB Ad3.111
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