Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
total RNA-seq
141
single cell RNA-seq
86
ChIP-seq
73
snATAC-seq
60
ATAC-seq
41
WGBS
4
Hi-C
4
pCHi-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
340
Transcription
133
DNA accessibility
86
DNA binding
41
DNA methylation
4
3D chromatin structure
Target of assay
86
histone
86
histone modification
44
broad histone mark
42
narrow histone mark
Date released
139
May, 2021
134
May, 2022
96
February, 2023
59
September, 2020
47
September, 2023
45
May, 2020
39
February, 2021
19
April, 2020
13
January, 2021
7
August, 2020
5
March, 2023
4
March, 2020
3
October, 2022
Available data
192
bigWig
182
bam
163
fastq
153
zippedFastqFolder
96
tsv
86
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
605
Homo sapiens
Biosample type
511
primary cell
93
tissue
4
cell line
2
stem cell
Organ
173
pancreas
146
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
Project
AMP
318
HPAP
221
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
193
GRCh38
185
hg19
Lab
318
Klaus Kaestner, Upenn
217
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
30
audit script error
4
inconsistent ontology term
award.project!
AMP
replication_type!
isogenic
BIOSAMPLE
ASSAY
610 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
Langerhans cell
85
48
pancreatic alpha cell
42
29
25
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
+ See 30 more…
tissue
kidney
47
islet of Langerhans
7
2
5
11
lung
9
10
pancreas
2
cell line
EndoC-BH1
1
1
EndoC_BH1
2
stem cell
SB Ad3.1
1
1
See all biosamples
Download