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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 73total RNA-seq
  • 50ChIP-seq
  • 17pCHi-C
  • 11ATAC-seq
  • 7snATAC-seq
  • 6WGBS
  • 4Hi-C
  • 3CRISPR genome editing followed by DNA sequencing
Assay category
  • 73Transcription
  • 50DNA binding
  • 18DNA accessibility
  • 6DNA methylation
  • 43D chromatin structure
Target of assay
  • 50histone
  • 50histone modification
  • 31narrow histone mark
  • 19broad histone mark
Date released
  • 87May, 2021
  • 41May, 2020
  • 21February, 2023
  • 7March, 2020
  • 6February, 2021
  • 5January, 2021
  • 3October, 2022
  • 1March, 2023
Available data
  • 116bam
  • 116bigWig
  • 72tsv
  • 50bed narrowPeak
  • 46tagAlign
  • 6fastq
  • 4hic
  • 3bedpe bed3+
  • 3cool
Organism
  • 171Homo sapiens
Biosample type
  • 138primary cell
  • 26tissue
  • 7cell line
Organ
  • 38pancreas
  • 13epithelium
  • 2blood
  • 2bodily fluid
  • 1bone element
  • 1bone marrow
  • 1connective tissue
  • 1thymus
Project
  • AMP
  • 161T1D
  • 9HPAP
  • 1ITG
Genome assembly (visualization)
  • 119hg19
  • 117GRCh38
Lab
  • 153Kyle Gaulton, UCSD
  • 9Klaus Kaestner, Upenn
  • 8AMP-T2D consortium
  • 1ITG
Audit category:
  • 9inconsistent ontology term
  • 3audit script error
award.project!
  • AMP
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

171 results

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Clear Filters
total RNA-seq
ChIP-seq
pCHi-C
ATAC-seq
snATAC-seq
WGBS
Hi-C
CRISPR genome editing followed by DNA sequencing
primary cell
monocyte25461
pancreatic alpha cell61
B cell21
CD8-positive, alpha-beta T cell21
naive B cel21
tissue
islet of Langerhans72113
pancreas2
thymus1
cell line
EndoC_BH1223
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