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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
total RNA-seq
50
ChIP-seq
17
pCHi-C
11
ATAC-seq
7
snATAC-seq
6
WGBS
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
Assay category
73
Transcription
50
DNA binding
18
DNA accessibility
6
DNA methylation
4
3D chromatin structure
Target of assay
50
histone
50
histone modification
31
narrow histone mark
19
broad histone mark
Date released
87
May, 2021
41
May, 2020
21
February, 2023
7
March, 2020
6
February, 2021
5
January, 2021
3
October, 2022
1
March, 2023
Available data
116
bam
116
bigWig
72
tsv
50
bed narrowPeak
46
tagAlign
6
fastq
4
hic
3
bedpe bed3+
3
cool
Organism
171
Homo sapiens
Biosample type
138
primary cell
26
tissue
7
cell line
Organ
38
pancreas
13
epithelium
2
blood
2
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
161
T1D
9
HPAP
1
ITG
Genome assembly (visualization)
119
hg19
117
GRCh38
Lab
153
Kyle Gaulton, UCSD
9
Klaus Kaestner, Upenn
8
AMP-T2D consortium
1
ITG
Audit category:
9
inconsistent ontology term
3
audit script error
award.project!
AMP
replication_type!
unreplicated
BIOSAMPLE
ASSAY
171 results
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total RNA-seq
ChIP-seq
pCHi-C
ATAC-seq
snATAC-seq
WGBS
Hi-C
CRISPR genome editing followed by DNA sequencing
primary cell
monocyte
25
46
1
pancreatic alpha cell
6
1
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
7
2
11
3
pancreas
2
thymus
1
cell line
EndoC_BH1
2
2
3
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