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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 71total RNA-seq
  • 48ChIP-seq
  • 11ATAC-seq
  • 4Hi-C
  • 4pCHi-C
  • 4snATAC-seq
Assay category
  • 71Transcription
  • 48DNA binding
  • 15DNA accessibility
  • 43D chromatin structure
Target of assay
  • 48histone
  • 48histone modification
  • 29narrow histone mark
  • 19broad histone mark
Date released
  • 73May, 2021
  • 41May, 2020
  • 18February, 2023
  • 4March, 2020
  • 3October, 2022
  • 2January, 2021
  • 1March, 2023
Available data
  • 112bam
  • 112bigWig
  • 64tsv
  • 48bed narrowPeak
  • 46tagAlign
  • 4hic
  • 3bedpe bed3+
  • 3cool
Organism
  • 142Homo sapiens
Biosample type
  • 120primary cell
  • 22tissue
Organ
  • 25pancreas
  • 3epithelium
  • 2blood
  • 2bodily fluid
Project
  • AMP
  • 138T1D
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 115hg19
  • 113GRCh38
Lab
  • 134Kyle Gaulton, UCSD
  • 4AMP-T2D consortium
  • 3Klaus Kaestner, Upenn
  • 1ITG
Audit category:
  • 4inconsistent ontology term
  • 3audit script error
award.project!
  • AMP
BIOSAMPLE
ASSAY

142 results

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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
pCHi-C
snATAC-seq
primary cell
monocyte2546
CD8-positive, alpha-beta T cell21
B cell2
T follicular helper cell2
T-helper 1 cell2
tissue
islet of Langerhans72112
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