Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 13pCHi-C
  • 6WGBS
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snATAC-seq
  • 2ChIP-seq
  • 2total RNA-seq
Assay category
  • 6DNA methylation
  • 3DNA accessibility
  • 2DNA binding
  • 2Transcription
Target of assay
  • 2histone
  • 2histone modification
  • 2narrow histone mark
Date released
  • 14May, 2021
  • 6February, 2021
  • 3February, 2023
  • 3January, 2021
  • 3March, 2020
Available data
  • 8tsv
  • 6fastq
  • 4bam
  • 4bigWig
  • 2bed narrowPeak
Organism
  • 29Homo sapiens
Biosample type
  • 18primary cell
  • 7cell line
  • 4tissue
Organ
  • 13pancreas
  • 10epithelium
  • 1bone element
  • 1bone marrow
  • 1connective tissue
  • 1thymus
Project
  • AMP
  • 23T1D
  • 6HPAP
Genome assembly (visualization)
  • 4GRCh38
  • 4hg19
Lab
  • 19Kyle Gaulton, UCSD
  • 6Klaus Kaestner, Upenn
  • 4AMP-T2D consortium
Audit category:
  • 5inconsistent ontology term
award.project!
  • AMP
BIOSAMPLE
ASSAY

29 results

search-icontable-tab-icon
Clear Filters
pCHi-C
WGBS
CRISPR genome editing followed by DNA sequencing
snATAC-seq
ChIP-seq
total RNA-seq
primary cell
pancreatic alpha cell6
CD4-positive, alpha-beta T cell2
B cell1
activated CD4-positive, alpha-beta T cell1
adult endothelial progenitor cell1
cell line
EndoC_BH1322
tissue
pancreas2
islet of Langerhans1
thymus1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego