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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 141single cell RNA-seq
  • 124total RNA-seq
  • 69snATAC-seq
  • 49ATAC-seq
  • 41WGBS
  • 38ChIP-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
Assay category
  • 269Transcription
  • 118DNA accessibility
  • 41DNA methylation
  • 38DNA binding
Target of assay
  • 38histone
  • 38histone modification
  • 25broad histone mark
  • 13narrow histone mark
Date released
  • 134May, 2022
  • 78February, 2023
  • 66May, 2021
  • 59September, 2020
  • 47September, 2023
  • 39February, 2021
  • 19April, 2020
  • 11January, 2021
  • 7August, 2020
  • 4March, 2023
  • 4May, 2020
Available data
  • 163fastq
  • 153zippedFastqFolder
  • 80bigWig
  • 70bam
  • 38bed narrowPeak
  • 38tagAlign
  • 32tsv
Organism
  • 463Homo sapiens
Biosample type
  • 391primary cell
  • 71tissue
  • 4cell line
  • 2stem cell
Organ
  • 148pancreas
  • 143epithelium
  • 47kidney
  • 19lung
  • 6blood
  • 6bodily fluid
Project
  • AMP
  • 315HPAP
  • 83T1D
  • 47KPMP
  • 19LungMap
  • 4community
Genome assembly (visualization)
  • 80GRCh38
  • 70hg19
Lab
  • 315Klaus Kaestner, Upenn
  • 83Kyle Gaulton, UCSD
  • 47KPMP
  • 19Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
Audit category:
  • 27audit script error
award.project!
  • AMP
BIOSAMPLE
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468 results

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Clear Filters
single cell RNA-seq
total RNA-seq
snATAC-seq
ATAC-seq
WGBS
ChIP-seq
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell8548
pancreatic alpha cell422925
monocyte2838
pancreatic beta cell111616
exocrine cell39
tissue
kidney47
lung910
islet of Langerhans3
pancreas2
cell line
EndoC-BH111
EndoC_BH12
stem cell
SB Ad3.111
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