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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
single cell RNA-seq
124
total RNA-seq
69
snATAC-seq
49
ATAC-seq
41
WGBS
38
ChIP-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
269
Transcription
118
DNA accessibility
41
DNA methylation
38
DNA binding
Target of assay
38
histone
38
histone modification
25
broad histone mark
13
narrow histone mark
Date released
134
May, 2022
78
February, 2023
66
May, 2021
59
September, 2020
47
September, 2023
39
February, 2021
19
April, 2020
11
January, 2021
7
August, 2020
4
March, 2023
4
May, 2020
Available data
163
fastq
153
zippedFastqFolder
80
bigWig
70
bam
38
bed narrowPeak
38
tagAlign
32
tsv
Organism
463
Homo sapiens
Biosample type
391
primary cell
71
tissue
4
cell line
2
stem cell
Organ
148
pancreas
143
epithelium
47
kidney
19
lung
6
blood
6
bodily fluid
Project
AMP
315
HPAP
83
T1D
47
KPMP
19
LungMap
4
community
Genome assembly (visualization)
80
GRCh38
70
hg19
Lab
315
Klaus Kaestner, Upenn
83
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
Audit category:
27
audit script error
award.project!
AMP
BIOSAMPLE
ASSAY
468 results
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single cell RNA-seq
total RNA-seq
snATAC-seq
ATAC-seq
WGBS
ChIP-seq
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
25
monocyte
28
38
pancreatic beta cell
11
16
16
exocrine cell
39
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tissue
kidney
47
lung
9
10
islet of Langerhans
3
pancreas
2
cell line
EndoC-BH1
1
1
EndoC_BH1
2
stem cell
SB Ad3.1
1
1
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