Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
400
candidate regulatory elements
284
gene expression
281
target gene predictions
224
chromatin state
204
accessible chromatin
110
binding sites
107
histone modifications
93
differential activity
63
variant allelic effects
42
Fine-mapped variants
41
eQTL
4
caQTL
1
pQTL
Date released
604
September, 2022
468
February, 2021
158
September, 2023
120
February, 2024
63
June, 2020
55
May, 2021
53
March, 2020
46
January, 2020
38
March, 2023
37
May, 2020
33
February, 2020
33
October, 2022
27
August, 2021
20
January, 2021
19
January, 2022
15
November, 2022
14
August, 2017
12
February, 2023
7
April, 2020
6
August, 2018
6
March, 2024
6
May, 2019
6
October, 2019
5
May, 2022
2
November, 2019
1
July, 2020
Available data
1175
bed bed3+
406
tsv
210
bed bed9
125
bigWig
78
txt
14
bigBed narrowPeak
11
bigBed bed9
6
csv
3
bam
3
bed gappedPeak
3
xls
Organism
1853
Homo sapiens
Biosample type
762
primary cell
720
tissue
339
cell line
32
in vitro differentiated cells
1
stem cell
Organ
822
epithelium
649
kidney
466
brain
410
connective tissue
364
musculature of body
302
lung
270
intestine
260
vasculature
259
pancreas
245
heart
244
limb
218
bodily fluid
213
embryo
207
blood
201
blood vessel
194
skin of body
168
large intestine
151
liver
143
extraembryonic component
110
stomach
105
eye
89
adipose tissue
88
bone element
81
mammary gland
81
uterus
80
small intestine
78
prostate gland
75
artery
71
placenta
64
penis
64
ureter
63
adrenal gland
62
lymph node
48
gonad
48
thymus
43
spinal cord
41
esophagus
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
vein
21
ovary
21
thyroid gland
19
mouth
18
lymphatic vessel
18
skeleton
14
bronchus
13
breast
13
pituitary gland
12
bone marrow
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
1670
AMP
155
KPMP
ENCODE
20
T1D
7
LungMap
2
community
Genome assembly (visualization)
1453
hg19
393
GRCh38
award.project!
ENCODE
BIOSAMPLE
TYPE
1854 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
gene expression
target gene predictions
chromatin state
accessible chromatin
binding sites
histone modifications
differential activity
variant allelic effects
Fine-mapped variants
eQTL
caQTL
pQTL
primary cell
hepatocyte
1
13
2
1
7
1
4
2
endothelial cell
9
1
5
2
1
2
1
2
epithelial cell of proximal tubule
2
16
1
1
1
1
1
glomerular endothelial cell
2
14
1
1
2
1
endothelial cell of umbilical vein
6
4
5
2
2
1
+ See 139 more…
tissue
brain
29
1
16
18
2
1
3
1
2
muscle of arm
33
16
16
1
1
muscle of leg
27
14
15
2
muscle of back
28
13
13
caudate nucleus
5
1
3
4
2
1
1
3
2
+ See 102 more…
cell line
K562
7
23
7
1
2
1
EndoC_BH1
8
1
8
3
1
GM12878
2
8
2
1
2
1
SK-N-DZ
4
2
2
1
1
SK-N-SH
4
3
2
1
+ See 53 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
hepatocyte
2
1
1
foreskin keratinocyte
1
1
1
hepatocyte(AFP)
3
mammary gland epithelial cell
1
1
1
+ See 8 more…
stem cell
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download