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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
267
candidate regulatory elements
236
gene expression
195
target gene predictions
137
chromatin state
81
accessible chromatin
60
differential activity
45
binding sites
36
histone modifications
21
variant allelic effects
12
eQTL
3
Fine-mapped variants
1
caQTL
Date released
394
September, 2022
295
February, 2021
140
September, 2023
82
February, 2024
46
August, 2021
34
June, 2020
22
May, 2020
17
January, 2020
14
March, 2020
12
May, 2021
11
February, 2020
7
October, 2022
5
August, 2017
4
March, 2023
2
January, 2022
2
March, 2024
2
May, 2022
1
April, 2019
1
July, 2020
1
May, 2019
1
November, 2019
1
September, 2018
Available data
645
bed bed3+
289
tsv
132
bed bed9
87
txt
52
bigWig
3
bigBed bed9
3
csv
1
bam
Organism
1094
Homo sapiens
Biosample type
424
primary cell
396
tissue
232
cell line
41
in vitro differentiated cells
1
stem cell
Organ
822
epithelium
649
kidney
466
brain
410
connective tissue
364
musculature of body
302
lung
270
intestine
260
vasculature
259
pancreas
245
heart
244
limb
218
bodily fluid
213
embryo
207
blood
201
blood vessel
194
skin of body
168
large intestine
151
liver
143
extraembryonic component
110
stomach
105
eye
89
adipose tissue
88
bone element
81
mammary gland
81
uterus
80
small intestine
78
prostate gland
75
artery
71
placenta
64
penis
64
ureter
63
adrenal gland
62
lymph node
48
gonad
48
thymus
43
spinal cord
41
esophagus
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
vein
21
ovary
21
thyroid gland
19
mouth
18
lymphatic vessel
18
skeleton
14
bronchus
13
breast
13
pituitary gland
12
bone marrow
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
954
AMP
140
KPMP
ENCODE
Genome assembly (visualization)
787
hg19
249
GRCh38
2
hg18
award.project!
ENCODE
BIOSAMPLE
TYPE
1094 results
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Clear Filters
candidate regulatory elements
gene expression
target gene predictions
chromatin state
accessible chromatin
differential activity
binding sites
histone modifications
variant allelic effects
eQTL
Fine-mapped variants
caQTL
primary cell
hepatocyte
1
13
2
1
7
1
4
2
epithelial cell of proximal tubule
2
16
1
1
1
1
1
glomerular endothelial cell
2
14
1
1
2
1
trophoblast cell
7
5
4
1
1
endothelial cell of hepatic sinusoid
4
4
6
+ See 73 more…
tissue
kidney
29
7
14
16
10
1
2
1
1
liver
13
1
10
9
4
1
1
2
7
1
right kidney
20
10
10
1
1
renal cortex interstitium
20
9
9
1
1
renal pelvis
19
9
9
2
1
+ See 24 more…
cell line
H1-hESC
1
8
39
1
1
2
1
MCF-7
9
6
5
1
3
2
HepG2
2
3
2
2
3
5
H9
7
8
1
HEK293
3
1
1
1
2
1
+ See 33 more…
in vitro differentiated cells
endodermal cell
4
2
2
mesodermal cell
4
1
1
1
trophoblast cell
2
2
1
ectodermal cell
2
1
1
hepatocyte
2
1
1
+ See 7 more…
stem cell
H1-hESC
1
See all biosamples
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