Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
186
ChIP-seq
151
ATAC-seq
102
single cell RNA-seq
59
total RNA-seq
31
DNase-seq
10
RRBS
7
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
186
DNA binding
183
DNA accessibility
163
Transcription
11
DNA methylation
7
3D chromatin structure
Target of assay
150
histone
150
histone modification
78
broad histone mark
72
narrow histone mark
32
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
73
September, 2018
59
August, 2017
55
June, 2019
55
May, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
12
February, 2023
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
420
bam
414
bigWig
231
fastq
205
bed narrowPeak
168
tsv
103
bigBed narrowPeak
43
bed broadPeak
43
bigBed broadPeak
37
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
551
Homo sapiens
Biosample type
2664
tissue
551
primary cell
387
in vitro differentiated cells
338
cell line
10
stem cell
Organ
248
epithelium
194
pancreas
38
connective tissue
36
kidney
31
vasculature
28
blood vessel
22
vein
14
liver
14
musculature of body
13
heart
12
brain
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
550
AMP
HPAP
T1D
1
ITG
Genome assembly (visualization)
436
hg19
340
GRCh38
Lab
515
AMP-T2D consortium
35
Kyle Gaulton, UCSD
1
ITG
Audit category:
49
inconsistent ontology term
1
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
award.project!
HPAP
T1D
files.file_type!
bed bedgraph
month_released!
November, 2017
BIOSAMPLE
ASSAY
551 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic beta cell
13
7
12
10
pancreatic alpha cell
13
6
12
10
CD8-positive, alpha-beta T cell
33
2
2
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
5
12
4
+ See 84 more…
See all biosamples
Download