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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
522
total RNA-seq
84
RNA microarray
82
ChIP-seq
17
ATAC-seq
6
single cell RNA-seq
3
snDrop-seq
1
pCHi-C
Assay category
528
Transcription
82
DNA binding
17
DNA accessibility
Target of assay
32
control
30
histone
30
histone modification
20
transcription factor
19
broad histone mark
11
RNA binding protein
11
narrow histone mark
Date released
641
February, 2021
397
November, 2017
284
August, 2017
273
August, 2021
272
October, 2019
194
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
101
February, 2023
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
61
May, 2021
56
November, 2019
55
March, 2020
51
December, 2017
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
January, 2018
4
March, 2023
3
December, 2019
1
August, 2022
1
October, 2022
Available data
621
bam
572
bigWig
530
tsv
89
txt
67
bed narrowPeak
58
fastq
45
bigBed narrowPeak
8
tagAlign
6
csv
1
bed bed3
1
bed bed3+
Organism
715
Homo sapiens
Biosample type
619
tissue
96
cell line
in vitro differentiated cells
primary cell
Organ
467
connective tissue
409
adipose tissue
150
bone element
77
pancreas
66
artery
66
blood vessel
66
heart
66
vasculature
26
epithelium
8
kidney
8
skeleton
6
limb
3
liver
Project
715
AMP
Genome assembly (visualization)
590
hg19
589
GRCh38
Lab
715
AMP-T2D consortium
Audit category:
110
inconsistent ontology term
5
audit script error
1
inconsistent replicate
Audit category:
1
inconsistent control read length
award.project!
HPAP
biosample_type!
in vitro differentiated cells
primary cell
BIOSAMPLE
ASSAY
715 results
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total RNA-seq
RNA microarray
ChIP-seq
ATAC-seq
single cell RNA-seq
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
body of pancreas
33
endocrine pancreas
16
+ See 17 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
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