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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
ChIP-seq
2
single cell RNA-seq
1
FAIRE-seq
Assay category
3
DNA binding
2
Transcription
1
DNA accessibility
Target of assay
3
transcription factor
1
RNA binding protein
Date released
February, 2021
3
November, 2017
1
November, 2018
1
October, 2019
1
September, 2018
Available data
2551
bam
2371
bigWig
1662
bed narrowPeak
1048
fastq
1025
bigBed narrowPeak
932
tsv
350
tagAlign
321
bed broadPeak
284
bigBed broadPeak
246
bed bed3+
69
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
16
hic
13
bedpe bed3+
5
bed bed3
5
hdf5
4
tar
2
csv
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
6
Homo sapiens
Biosample type
3
cell line
3
primary cell
Organ
3
liver
1
blood vessel
1
epithelium
1
vasculature
1
vein
Project
6
AMP
Genome assembly (visualization)
4
hg19
Lab
6
AMP-T2D consortium
award.project!
HPAP
biosample_type!
in vitro differentiated cells
month_released!
February, 2021
BIOSAMPLE
ASSAY
6 results
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ChIP-seq
single cell RNA-seq
FAIRE-seq
cell line
HepG2
3
primary cell
pancreatic cell
2
endothelial cell of umbilical vein
1
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