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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
91
ATAC-seq
13
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
single cell RNA-seq
Assay category
93
DNA accessibility
14
Transcription
Date released
644
February, 2021
404
November, 2017
343
August, 2017
341
May, 2020
306
October, 2019
277
August, 2021
267
May, 2021
218
June, 2019
168
July, 2018
120
May, 2019
113
February, 2023
108
July, 2019
85
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
66
May, 2022
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
5
March, 2019
5
March, 2023
4
January, 2018
3
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
63
bed narrowPeak
16
tsv
5
bed bed3
4
txt
Organism
112
Homo sapiens
Biosample type
95
tissue
in vitro differentiated cells
12
primary cell
6
cell line
Organ
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
19
pancreas
15
epithelium
8
bone element
8
skeleton
1
adipose tissue
1
brain
1
connective tissue
Project
90
AMP
HPAP
23
T1D
Genome assembly (visualization)
35
GRCh38
33
hg19
Lab
90
AMP-T2D consortium
23
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
award.project!
HPAP
biosample_type!
in vitro differentiated cells
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
113 results
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ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
single cell RNA-seq
tissue
coronary artery
35
islet of Langerhans
11
5
2
retina
15
2
pigmented layer of retina
12
2
acetabular part of hip bone
1
1
+ See 6 more…
primary cell
gabaergic neuron
3
glutamatergic neuron
3
microglial cell/astrocyte
3
oligodendrocyte
3
cell line
EndoC_BH1
3
2
1
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