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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
ChIP-seq
32
DNase-seq
6
Hi-C
5
total RNA-seq
4
RRBS
2
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
1
snATAC-seq
Assay category
89
DNA binding
35
DNA accessibility
7
Transcription
6
3D chromatin structure
5
DNA methylation
Target of assay
51
transcription factor
26
histone
26
histone modification
16
broad histone mark
10
RNA binding protein
10
chromatin remodeller
10
control
10
narrow histone mark
Date released
32
June, 2019
27
December, 2018
26
August, 2017
18
January, 2019
15
November, 2018
7
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
January, 2018
2
May, 2022
Available data
112
bigWig
105
bed narrowPeak
104
bam
92
bigBed narrowPeak
62
fastq
45
bed broadPeak
33
bed bed3+
32
bigBed broadPeak
15
tagAlign
7
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
txt
Organism
143
Homo sapiens
Biosample type
82
tissue
61
cell line
primary cell
Organ
777
liver
645
connective tissue
600
pancreas
489
adipose tissue
380
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
143
AMP
Genome assembly (visualization)
116
hg19
96
GRCh38
Lab
143
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent control
1
inconsistent ontology term
award.project!
HPAP
biosample_type!
primary cell
organ_slims!
small intestine
BIOSAMPLE
ASSAY
143 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
RRBS
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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cell line
GM12878
60
1
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