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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1160
total RNA-seq
1032
ChIP-seq
264
ATAC-seq
176
single cell RNA-seq
174
DNase-seq
87
RNA microarray
29
pCHi-C
28
snATAC-seq
25
WGBS
19
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
GRO-seq
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
Assay category
1352
Transcription
1032
DNA binding
470
DNA accessibility
36
DNA methylation
19
3D chromatin structure
Target of assay
686
histone modification
685
histone
361
narrow histone mark
323
broad histone mark
208
control
140
transcription factor
36
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
571
February, 2021
352
August, 2017
265
August, 2021
224
October, 2019
193
May, 2020
172
May, 2021
160
June, 2019
120
July, 2018
91
December, 2017
82
November, 2017
80
April, 2019
76
February, 2023
74
October, 2018
70
July, 2019
66
May, 2022
65
May, 2019
47
September, 2023
45
March, 2020
45
November, 2019
40
May, 2024
39
February, 2018
26
November, 2018
23
October, 2017
22
February, 2020
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
January, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
November, 2020
1
August, 2018
1
August, 2022
Available data
2111
bam
1961
bigWig
1193
tsv
1016
bed narrowPeak
518
fastq
516
bigBed narrowPeak
278
tagAlign
225
bed bed3+
209
bed broadPeak
172
bigBed broadPeak
160
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
16
bedpe bed3+
14
hic
10
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
3029
Homo sapiens
Biosample type
2644
tissue
733
primary cell
596
cell line
394
in vitro differentiated cells
10
stem cell
Organ
644
connective tissue
508
pancreas
489
adipose tissue
376
liver
314
heart
299
kidney
265
brain
158
bone element
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
39
epithelium
29
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2941
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
2019
GRCh38
1982
hg19
4
hg18
Lab
2632
AMP-T2D consortium
142
Katalin Susztak, Upenn
99
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
206
inconsistent ontology term
27
inconsistent control
11
audit script error
Audit category:
32
missing controlled_by
Audit category:
23
inconsistent control read length
1
inconsistent assembly
award.project!
HPAP
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
3038 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
snATAC-seq
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
GRO-seq
MeRIP-seq
snDrop-seq
Capture-C
tissue
islet of Langerhans
292
71
68
6
1
4
7
3
1
1
4
adipose tissue
382
2
3
1
3
liver
167
145
20
1
2
1
3
1
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
+ See 170 more…
in vitro differentiated cells
adipocyte
5
67
8
1
1
cardiomyocytes
59
3
embryonic stem cell
7
40
6
1
neural progenitor cell
7
21
10
pancreatic endoderm
4
18
1
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