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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
ChIP-seq
134
total RNA-seq
38
ATAC-seq
5
pCHi-C
4
GRO-seq
2
Capture-C
2
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
187
DNA binding
136
Transcription
39
DNA accessibility
2
3D chromatin structure
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
RNA binding protein
3
chromatin remodeller
Date released
127
May, 2021
64
August, 2017
42
August, 2021
41
December, 2017
39
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
281
bam
249
bigWig
135
fastq
129
tsv
124
bed narrowPeak
40
tagAlign
25
bed bed3+
13
bigBed narrowPeak
7
bed bedgraph
5
bed bed3
5
bedpe bed3+
3
txt
2
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
375
Homo sapiens
Biosample type
2501
tissue
677
primary cell
567
cell line
375
in vitro differentiated cells
10
stem cell
Organ
91
connective tissue
29
embryo
22
epithelium
13
liver
3
pancreas
1
adipose tissue
1
heart
Project
375
AMP
Genome assembly (visualization)
283
hg19
255
GRCh38
4
hg18
Lab
326
AMP-T2D consortium
42
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
109
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
award.project!
HPAP
month_released!
April, 2018
October, 2019
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
375 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Capture-C
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
63
5
6
1
1
cardiomyocytes
3
59
embryonic stem cell
35
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
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