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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
236
ChIP-seq
153
total RNA-seq
149
ATAC-seq
102
single cell RNA-seq
17
pCHi-C
8
snATAC-seq
6
Hi-C
2
small RNA-seq
1
DNAme array
1
DNase-seq
Assay category
257
Transcription
236
DNA binding
158
DNA accessibility
6
3D chromatin structure
1
DNA methylation
Target of assay
202
histone
202
histone modification
104
broad histone mark
98
narrow histone mark
32
control
5
RNA binding protein
5
transcription factor
Date released
206
May, 2021
147
May, 2020
73
September, 2018
48
July, 2018
44
August, 2017
43
April, 2018
31
June, 2019
October, 2019
22
July, 2019
12
February, 2023
8
January, 2021
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
3
November, 2017
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
580
bigWig
578
bam
274
bed narrowPeak
262
tsv
240
fastq
100
tagAlign
96
bigBed narrowPeak
45
bed broadPeak
bigBed broadPeak
35
bed bed3+
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
Organism
675
Homo sapiens
Biosample type
2338
tissue
675
primary cell
573
cell line
385
in vitro differentiated cells
10
stem cell
Organ
197
epithelium
194
pancreas
32
connective tissue
12
kidney
12
musculature of body
10
liver
9
brain
9
heart
8
blood
8
bodily fluid
7
vasculature
6
blood vessel
3
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
1
vein
Project
470
AMP
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
551
hg19
461
GRCh38
Lab
435
AMP-T2D consortium
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
47
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
award.project!
HPAP
files.file_type!
bed bedMethyl
bigBed broadPeak
month_released!
October, 2019
BIOSAMPLE
ASSAY
675 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
DNAme array
DNase-seq
primary cell
monocyte
85
54
15
1
1
pancreatic beta cell
13
10
7
12
pancreatic alpha cell
13
10
6
12
CD8-positive, alpha-beta T cell
33
4
2
1
pancreatic ductal cell
13
4
4
10
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