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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
94
single cell RNA-seq
28
total RNA-seq
23
ATAC-seq
1
DNase-seq
1
RRBS
Assay category
122
Transcription
94
DNA binding
24
DNA accessibility
1
DNA methylation
Target of assay
73
histone
73
histone modification
40
narrow histone mark
33
broad histone mark
16
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
73
September, 2018
58
August, 2017
48
July, 2018
38
April, 2018
9
November, 2017
5
September, 2017
3
August, 2018
3
June, 2018
2
October, 2018
1
February, 2021
1
November, 2018
Available data
607
bam
601
bigWig
295
bed narrowPeak
262
tsv
240
fastq
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
241
Homo sapiens
Biosample type
428
cell line
339
tissue
241
primary cell
145
in vitro differentiated cells
4
stem cell
Organ
189
pancreas
169
epithelium
9
brain
6
vasculature
4
connective tissue
3
blood vessel
Project
241
AMP
HPAP
Genome assembly (visualization)
227
hg19
220
GRCh38
Lab
241
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
award.project!
HPAP
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
241 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
RRBS
primary cell
pancreatic beta cell
13
12
10
7
pancreatic alpha cell
13
12
10
6
pancreatic ductal cell
13
9
4
4
pancreatic acinar cell
8
9
4
5
pancreatic endocrine cell
23
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