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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
235
ChIP-seq
146
total RNA-seq
100
single cell RNA-seq
68
ATAC-seq
19
DNase-seq
4
Hi-C
2
small RNA-seq
1
FAIRE-seq
Assay category
248
Transcription
235
DNA binding
88
DNA accessibility
4
3D chromatin structure
Target of assay
220
histone
220
histone modification
113
broad histone mark
107
narrow histone mark
10
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
171
May, 2021
90
May, 2020
72
September, 2018
48
July, 2018
46
August, 2017
43
April, 2018
35
June, 2019
18
July, 2019
15
October, 2019
9
November, 2017
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
August, 2021
3
June, 2018
2
February, 2021
2
October, 2018
Available data
578
bam
575
bigWig
273
bed narrowPeak
258
tsv
240
fastq
100
tagAlign
93
bigBed narrowPeak
39
bed broadPeak
39
bigBed broadPeak
27
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
575
Homo sapiens
Biosample type
1681
tissue
575
primary cell
510
cell line
259
in vitro differentiated cells
3
stem cell
Organ
221
epithelium
182
pancreas
32
connective tissue
29
vasculature
kidney
24
blood vessel
20
brain
15
vein
11
liver
11
musculature of body
10
heart
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
395
AMP
180
T1D
HPAP
Genome assembly (visualization)
574
hg19
481
GRCh38
Lab
360
AMP-T2D consortium
215
Kyle Gaulton, UCSD
Audit category:
33
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
award.project!
HPAP
month_released!
August, 2020
organ_slims!
kidney
BIOSAMPLE
ASSAY
575 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
small RNA-seq
FAIRE-seq
primary cell
monocyte
84
53
2
CD8-positive, alpha-beta T cell
33
4
2
pancreatic beta cell
7
10
12
7
pancreatic alpha cell
7
10
12
6
pancreatic ductal cell
13
4
10
4
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